dna.vim : Helps visually parse DNA sequences and common sequencing files (BAM, PAF, FA)
| script karma |
Rating 0/0,
Downloaded by 14 |
Comments, bugs, improvements
|
Vim wiki
|
| created by |
| Megan Le |
| |
| script type |
| syntax |
| |
| description |
Most up-to-date version: https://github.com/mktle/dna.vim
This script helps parse commonly used sequencing files (SAM/BAM/PAF/GAF/GFA/FA/FQ... or anything with a DNA sequence) through syntax highlighting and helptext.
1) The characters A/C/G/T are colored (consistent with IGV colors)
2) Using the commands :SAM, :BAM, :GAF, or :PAF in their respective files will tell you the description of the field your cursor is hovering over (with flag decoding for SAM/BAM flags)
3) Operation blocks within CIGAR strings are colored separately from each other
4) Sequence names in FASTA/FASTQ files are colored |
| |
| install details |
| Add the script to ~/.vim/plugin/ |
| |
script versions (upload new version)
Click on the package to download.
ip used for rating: 216.73.216.199
|
